compile and run on Debian Jessie
Posted: 05 Dec 2016, 14:53
Hi,
I'm new to Elmerfem and would like to give it a try. I cloned the devel github. Cmake and make did quite well, from my point of view. I'm at
But when I start the solver binary ElmerSolver_mpi from build directory with an example I get the following error. It seams I'm not the first one with this but I could not solve it myself.
cheers Bernd
PS: A few of you guys I have met already at the FreeCAD FEM forum. I use the same name over there.
I'm new to Elmerfem and would like to give it a try. I cloned the devel github. Cmake and make did quite well, from my point of view. I'm at
Code: Select all
$ git log -1
commit 4fb13d7cb246737a6eeec7d0d6561898a88f5aa3
Author: Peter Raback <peter.raback@csc.fi>
Date: Fri Dec 2 14:16:15 2016 +0200
small fix to test case
$
$ git log -10 --oneline
4fb13d7 small fix to test case
9ff82c1 Merge branch 'devel' into SolverLibTests
f9e18f1 Remove some tests that do not pass, for now
57156d7 Merge pull request #77 from ElmerCSC/RemoveObsolite
2a8d137 Drop one case in parallel tests as somewheat redundant
ace5bb2 ElmerGrid saves node and element indexes as int32 when writing ascii vtu format
2ccd3d1 fix to test case
dc0ac1e fix to test case
78544fe Added some Hypre tests
6c1643c added some test which will test external libraries
$
Code: Select all
$ cd /home/hugo/Documents/projekte--BIM--opendev/dev--elmerfem/example
hugo@ahorn:~/Documents/projekte--BIM--opendev/dev--elmerfem/example$ /home/hugo/Documents/dev/elmerfem/elmerfem-dev/build/fem/src/ElmerSolver_mpi BDM.sif
ELMER SOLVER (v 8.2) STARTED AT: 2016/12/05 12:52:13
[ahorn:10905] [[INVALID],INVALID] ORTE_ERROR_LOG: A system-required executable either could not be found or was not executable by this user in file ess_singleton_module.c at line 231
[ahorn:10905] [[INVALID],INVALID] ORTE_ERROR_LOG: A system-required executable either could not be found or was not executable by this user in file ess_singleton_module.c at line 140
[ahorn:10905] [[INVALID],INVALID] ORTE_ERROR_LOG: A system-required executable either could not be found or was not executable by this user in file runtime/orte_init.c at line 128
--------------------------------------------------------------------------
It looks like orte_init failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during orte_init; some of which are due to configuration or
environment problems. This failure appears to be an internal failure;
here's some additional information (which may only be relevant to an
Open MPI developer):
orte_ess_set_name failed
--> Returned value A system-required executable either could not be found or was not executable by this user (-127) instead of ORTE_SUCCESS
--------------------------------------------------------------------------
--------------------------------------------------------------------------
It looks like MPI_INIT failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during MPI_INIT; some of which are due to configuration or environment
problems. This failure appears to be an internal failure; here's some
additional information (which may only be relevant to an Open MPI
developer):
ompi_mpi_init: orte_init failed
--> Returned "A system-required executable either could not be found or was not executable by this user" (-127) instead of "Success" (0)
--------------------------------------------------------------------------
[ahorn:10905] *** An error occurred in MPI_Init
[ahorn:10905] *** on a NULL communicator
[ahorn:10905] *** Unknown error
[ahorn:10905] *** MPI_ERRORS_ARE_FATAL: your MPI job will now abort
--------------------------------------------------------------------------
An MPI process is aborting at a time when it cannot guarantee that all
of its peer processes in the job will be killed properly. You should
double check that everything has shut down cleanly.
Reason: Before MPI_INIT completed
Local host: ahorn
PID: 10905
--------------------------------------------------------------------------
hugo@ahorn:~/Documents/projekte--BIM--opendev/dev--elmerfem/example$
PS: A few of you guys I have met already at the FreeCAD FEM forum. I use the same name over there.