ElmerGUI cmake compilation error, ubuntu 14.04

[stevemi]

Successfully installed Elmer non-gui using make, but got errors installing GUI also using make. Tried cmake, same problem.
Error text is: ....../ElmerGUI/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx:8:19: error: ‘Q_WS_QWS’ was not declare
d in this scope
return ((int*)(&Q_WS_QWS))[argc];
All the subsequent error statements in the cmake log file are pointing to this.
New member. Not a developer or expert programmer; any suggestions?

[stevemi]

Correction to previous post: Using Ubuntu 14.10, not 14.04.

[annier]

Hi Stevemi,
-Can you exactly point out in which step of compilation, there was error?
1. Please install cmake-gui and install according to the following thread.
2. Write whether this message is shown at the configure, generate make file or during installation stage?
3. If the error message is shown at the configure stage, unclick the feature which is unavailable .
4. Also, attach the whole cmake log file.


Yours
Anil Kunwar

[stevemi]

annier: Thanks for the response. The error occurred when running cmake. Today I tried your solution, but still got errors after pressing the configure button in the menu that was presented. I'm attaching both the information which appeared after pressing configure, as well as the cmake output log:

This appeared in the cmake window:

The Fortran compiler identification is GNU
The C compiler identification is GNU 4.9.1
The CXX compiler identification is GNU 4.9.1
Check for working Fortran compiler: /usr/bin/f95
Check for working Fortran compiler: /usr/bin/f95 -- works
Detecting Fortran compiler ABI info
Detecting Fortran compiler ABI info - done
Checking whether /usr/bin/f95 supports Fortran 90
Checking whether /usr/bin/f95 supports Fortran 90 -- yes
Check for working C compiler: /usr/bin/cc
Check for working C compiler: /usr/bin/cc -- works
Detecting C compiler ABI info
Detecting C compiler ABI info - done
Check for working CXX compiler: /usr/bin/c++
Check for working CXX compiler: /usr/bin/c++ -- works
Detecting CXX compiler ABI info
Detecting CXX compiler ABI info - done
CMake Error at cmake/Modules/FindPackageHandleStandardArgs.cmake:108 (message):
Could NOT find MPI_C (missing: MPI_C_LIBRARIES MPI_C_INCLUDE_PATH)
Call Stack (most recent call first):
cmake/Modules/FindPackageHandleStandardArgs.cmake:315 (_FPHSA_FAILURE_MESSAGE)
cmake/Modules/FindMPI.cmake:642 (find_package_handle_standard_args)
CMakeLists.txt:95 (FIND_PACKAGE)


Configuring incomplete, errors occurred!
See also "/home/sbmiller/elmer/build/CMakeFiles/CMakeOutput.log".

This is the CMakeOutput.log file:

The system is: Linux - 3.16.0-28-generic - x86_64
Compiling the Fortran compiler identification source file "CMakeFortranCompilerId.F" succeeded.
Compiler: /usr/bin/f95
Build flags:
Id flags:

The output was:
0


Compilation of the Fortran compiler identification source "CMakeFortranCompilerId.F" produced "a.out"

The Fortran compiler identification is GNU, found in "/home/sbmiller/elmer/build/CMakeFiles/2.8.12.2/CompilerIdFortran/a.out"

Compiling the C compiler identification source file "CMakeCCompilerId.c" succeeded.
Compiler: /usr/bin/cc
Build flags:
Id flags:

The output was:
0


Compilation of the C compiler identification source "CMakeCCompilerId.c" produced "a.out"

The C compiler identification is GNU, found in "/home/sbmiller/elmer/build/CMakeFiles/2.8.12.2/CompilerIdC/a.out"

Compiling the CXX compiler identification source file "CMakeCXXCompilerId.cpp" succeeded.
Compiler: /usr/bin/c++
Build flags:
Id flags:

The output was:
0


Compilation of the CXX compiler identification source "CMakeCXXCompilerId.cpp" produced "a.out"

The CXX compiler identification is GNU, found in "/home/sbmiller/elmer/build/CMakeFiles/2.8.12.2/CompilerIdCXX/a.out"

Determining if the Fortran compiler works passed with the following output:
Change Dir: /home/sbmiller/elmer/build/CMakeFiles/CMakeTmp

Run Build Command:/usr/bin/make "cmTryCompileExec832225092/fast"
/usr/bin/make -f CMakeFiles/cmTryCompileExec832225092.dir/build.make CMakeFiles/cmTryCompileExec832225092.dir/build
make[1]: Entering directory '/home/sbmiller/elmer/build/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report /home/sbmiller/elmer/build/CMakeFiles/CMakeTmp/CMakeFiles 1
Building Fortran object CMakeFiles/cmTryCompileExec832225092.dir/testFortranCompiler.f.o
/usr/bin/f95 -c /home/sbmiller/elmer/build/CMakeFiles/CMakeTmp/testFortranCompiler.f -o CMakeFiles/cmTryCompileExec832225092.dir/testFortranCompiler.f.o
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/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTryCompileExec832225092.dir/link.txt --verbose=1
/usr/bin/f95 CMakeFiles/cmTryCompileExec832225092.dir/testFortranCompiler.f.o -o cmTryCompileExec832225092 -rdynamic
make[1]: Leaving directory '/home/sbmiller/elmer/build/CMakeFiles/CMakeTmp'


Detecting Fortran compiler ABI info compiled with the following output:
Change Dir: /home/sbmiller/elmer/build/CMakeFiles/CMakeTmp

Run Build Command:/usr/bin/make "cmTryCompileExec1679422480/fast"
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make[1]: Entering directory '/home/sbmiller/elmer/build/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report /home/sbmiller/elmer/build/CMakeFiles/CMakeTmp/CMakeFiles 1
Building Fortran object CMakeFiles/cmTryCompileExec1679422480.dir/CMakeFortranCompilerABI.F.o
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Again, thanks for your help.
stevemi

[annier]

Hi Stevemi,
I guess that you need to install the MPI libraries.
Install openMPI in your computer and reinstall Elmer.

Code: Select all

$ sudo apt-get install libopenmpi-dev openmpi-bin openmpi-doc

Note: The latest versions of Elmer (Elmer solvers) require mpi for compilation.

Yours
Anil Kunwar

[stevemi]

Hi annier: Tried your approach, making progress, but not quite there yet. I made the cmake window as clean as possible by locating some files and modifying the .pri file. There are no red entries, but there are errors in the output text below the entries. Re Python specifically, I have the necessary files and have tried to "tell" cmake where they are via the .pri file, but no luck so far. At present, I'm running without it to get a "clean" cmake entry window. I'm uploading the two Cmake log files.
Stevemi

[annier]

Hi Stevemi,
How did you download the elmer software?
Did you get from the git repository

Code: Select all

$git clone https://www.github.com/ElmerCSC/elmerfem

or from other sources?
Some older versions of Elmer cannot be compiled via cmake.
When i look at your log files, i find that the build process has been halted without entering any modules of Elmer. Please download the fresher version of Elmer as mentioned in the above link and restart the installation.

Yours
Anil Kunwar

[stevemi]

Hi, annier: I had in fact loaded it using git as you indicated, but will revisit this process.
stevemi

[stevemi]

Annier: Here's more info that may help. The process does halt (terminal window prompt does not return). I've included the text report that appears in the cmake window below:
A library with BLAS API found.
A library with BLAS API found.
A library with LAPACK API found.
Checking whether /usr/bin/f95 supports CONTIGUOUS
Checking whether /usr/bin/f95 supports CONTIGUOUS -- yes
Checking whether /usr/bin/f95 supports EXECUTE_COMMAND_LINE
Checking whether /usr/bin/f95 supports EXECUTE_COMMAND_LINE -- yes
Building ElmerGUI
------------------------------------------------
------------------------------------------------
CMake Warning (dev) at /usr/share/cmake-2.8/Modules/CheckCXXSymbolExists.cmake:38 (include):
File /usr/share/cmake-2.8/Modules/CheckCXXSymbolExists.cmake includes
/usr/share/cmake-2.8/Modules/CheckSymbolExists.cmake (found via
CMAKE_MODULE_PATH) which shadows
/usr/share/cmake-2.8/Modules/CheckSymbolExists.cmake. This may cause
errors later on .

Policy CMP0017 is not set: Prefer files from the CMake module directory
when including from there. Run "cmake --help-policy CMP0017" for policy
details. Use the cmake_policy command to set the policy and suppress this
warning.
Call Stack (most recent call first):
/usr/share/cmake-2.8/Modules/FindQt4.cmake:392 (include)
ElmerGUI/CMakeLists.txt:16 (FIND_PACKAGE)
This warning is for project developers. Use -Wno-dev to suppress it.

[ElmerGUI] Qt4: TRUE
[ElmerGUI] Qt4_LIBRARIES:
------------------------------------------------
CMake Warning (dev) at /usr/share/cmake-2.8/Modules/CheckCXXSymbolExists.cmake:38 (include):
File /usr/share/cmake-2.8/Modules/CheckCXXSymbolExists.cmake includes
/usr/share/cmake-2.8/Modules/CheckSymbolExists.cmake (found via
CMAKE_MODULE_PATH) which shadows
/usr/share/cmake-2.8/Modules/CheckSymbolExists.cmake. This may cause
errors later on .

Policy CMP0017 is not set: Prefer files from the CMake module directory
when including from there. Run "cmake --help-policy CMP0017" for policy
details. Use the cmake_policy command to set the policy and suppress this
warning.
Call Stack (most recent call first):
/usr/share/cmake-2.8/Modules/FindQt4.cmake:392 (include)
ElmerGUItester/CMakeLists.txt:3 (FIND_PACKAGE)
This warning is for project developers. Use -Wno-dev to suppress it.

Found Qt4: /usr/bin/qmake-qt4 (found version "4.8.6")
------------------------------------------------
CMake Warning (dev) at /usr/share/cmake-2.8/Modules/CheckCXXSymbolExists.cmake:38 (include):
File /usr/share/cmake-2.8/Modules/CheckCXXSymbolExists.cmake includes
/usr/share/cmake-2.8/Modules/CheckSymbolExists.cmake (found via
CMAKE_MODULE_PATH) which shadows
/usr/share/cmake-2.8/Modules/CheckSymbolExists.cmake. This may cause
errors later on .

Policy CMP0017 is not set: Prefer files from the CMake module directory
when including from there. Run "cmake --help-policy CMP0017" for policy
details. Use the cmake_policy command to set the policy and suppress this
warning.
Call Stack (most recent call first):
/usr/share/cmake-2.8/Modules/FindQt4.cmake:392 (include)
ElmerGUIlogger/CMakeLists.txt:4 (FIND_PACKAGE)
This warning is for project developers. Use -Wno-dev to suppress it.

Found Qt4: /usr/bin/qmake-qt4 (found version "4.8.6")
[ElmerGUIlogger] Qt4: TRUE
[ElmerGUIlogger] Qt4_LIBRARIES:
------------------------------------------------
CMake Warning at ElmerGUIlogger/CMakeLists.txt:28 (MESSAGE):
QT_USE_FILE: /usr/share/cmake-2.8/Modules/UseQt4.cmake


------------------------------------------------
BLAS library: /usr/lib/libblas.so.3gf
LAPACK library: /usr/lib/liblapack.so.3gf;/usr/lib/libblas.so.3gf
------------------------------------------------
Fortran compiler: /usr/bin/f95
Fortran flags:
------------------------------------------------
C compiler: /usr/bin/cc
C flags:
------------------------------------------------
MPI Fortran: TRUE
MPI Fortran compiler: /usr/bin/mpif90
MPI Fortran flags:
MPI Fortran include dir: /usr/lib/openmpi/include;/usr/lib/openmpi/lib
MPI Fortran libraries: /usr/lib/libmpi_f90.so;/usr/lib/libmpi_f77.so;/usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so
MPI Fortran link flags:
------------------------------------------------
MPI C: TRUE
MPI C compiler: /usr/bin/mpicc
MPI C flags:
MPI C include dir: /usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi
MPI C libraries: /usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so
MPI C flags:
------------------------------------------------
Building ElmerGUI tester
------------------------------------------------
Building ElmerGUI logger
------------------------------------------------
------------------------------------------------
Package filename: elmerfem-7.0-8eaded3-20141228_Linux-x86_64
Patch version: 7.0-8eaded3
Configuring done
Generating done

[annier]

Hi Stevemi,
-The two phrases

Code: Select all

Configuring done
Generationg done

at the end
clarify that the configure and generate have been successfully done.
You can proceed with the installation.


-The judicious use of Cmake is also, a matter of art and we will keep on learning it day by day.


Yours
Anil Kunwar