Re: Using multiple softwares for performing a simulation
Posted: 26 Nov 2019, 12:12
Lecture notes on Continuum Mechanics, Fracture Mechanics and FEM
1. Continuum Mechanics
2. Fracture Mechanics
3. Finite Element Method
Integrating DFT and MD for snap potentials
1. Tutorials on Quantum Espresso software
2. Tutorials on the LAMMPS software
3. Professor Boris Kozinsky and Materials Intelligence Research group
(a) Tutorials in LAMMPS and molecular dynamics
(b) Tutorials in DFT theory (first principle energy methods) and Quantum Espresso
(c) Tutorials in DFT theory (materials properties from DFT) and Quantum Espresso
4. TopoTools for visualizing molecular dynamics simulations
5. ATOMSK - a computer tool for dealing with atomic data during MD and DFT calculations
6. VMD software
7. WOLVERTON research group in materials science
8. OVITO software
9. ATOMEYE software
Ubuntu -desktop and WSL system
1. https://askubuntu.com/questions/1162808 ... -18-04-lts
2. https://askubuntu.com/questions/993225/ ... as-of-2018
Tutorials on Support Vector Machine (SVM)
1. Explanatory tutorial
2. scikit-learn website
polynomial regression and genomic datascience using python tools
1. Curve and surface fitting in python
2. statsmodels-statistics in python
3. multivariate polynomial regression or supervised machine learning example
4. Multiple linear regression or supervised machine learning using python
5. Definitions of robustness and accuracy of data analysis using multivariate regression
6. Deep learning for small datasets
7. Metrics-Receiver operating characteristics curve and Area under curve
8. Understanding the format of genomic data
9. Sequence formats-genomatics website
10. Example of svm with tensorflow and keras
Converting latex equations to words using html mathjax format
1. Example
2. Steps
Dataset and scientific queries related ... ealthcare)
1. Introduction
2. CORD-19 dataset
FEM framework for proteins simulations
1. Pymol and surface solvent
2. Pymol software for beginners
3. FFEA - Fluctuating Finite Element Analysis
4. FFEA at bitbucket repository
5. GAMer - software for Geometry and meshing tool for proteins simulations using FEA
6. Fenics software
7. FOLDING@HOME - virtual supercomputers for protein simulations
8. threevis library
4. openmesh-python library
Literatures on Spikes-ACE2 interaction
1. Role of ACE2 in COVID-19
1. Continuum Mechanics
2. Fracture Mechanics
3. Finite Element Method
Integrating DFT and MD for snap potentials
1. Tutorials on Quantum Espresso software
2. Tutorials on the LAMMPS software
3. Professor Boris Kozinsky and Materials Intelligence Research group
(a) Tutorials in LAMMPS and molecular dynamics
(b) Tutorials in DFT theory (first principle energy methods) and Quantum Espresso
(c) Tutorials in DFT theory (materials properties from DFT) and Quantum Espresso
4. TopoTools for visualizing molecular dynamics simulations
5. ATOMSK - a computer tool for dealing with atomic data during MD and DFT calculations
6. VMD software
7. WOLVERTON research group in materials science
8. OVITO software
9. ATOMEYE software
Ubuntu -desktop and WSL system
1. https://askubuntu.com/questions/1162808 ... -18-04-lts
2. https://askubuntu.com/questions/993225/ ... as-of-2018
Tutorials on Support Vector Machine (SVM)
1. Explanatory tutorial
2. scikit-learn website
polynomial regression and genomic datascience using python tools
1. Curve and surface fitting in python
2. statsmodels-statistics in python
3. multivariate polynomial regression or supervised machine learning example
4. Multiple linear regression or supervised machine learning using python
5. Definitions of robustness and accuracy of data analysis using multivariate regression
6. Deep learning for small datasets
7. Metrics-Receiver operating characteristics curve and Area under curve
8. Understanding the format of genomic data
9. Sequence formats-genomatics website
10. Example of svm with tensorflow and keras
Converting latex equations to words using html mathjax format
1. Example
2. Steps
Dataset and scientific queries related ... ealthcare)
1. Introduction
2. CORD-19 dataset
FEM framework for proteins simulations
1. Pymol and surface solvent
2. Pymol software for beginners
3. FFEA - Fluctuating Finite Element Analysis
4. FFEA at bitbucket repository
5. GAMer - software for Geometry and meshing tool for proteins simulations using FEA
6. Fenics software
7. FOLDING@HOME - virtual supercomputers for protein simulations
8. threevis library
4. openmesh-python library
Literatures on Spikes-ACE2 interaction
1. Role of ACE2 in COVID-19